PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009610349.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 258aa    MW: 29167.8 Da    PI: 7.1501
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009610349.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.11.2e-30130189159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dgy+WrKYGqK+ ++++ pr+YY+C++a +Cpvkkkv+rs edp+v++ tYegeHnh+
  XP_009610349.1 130 VKDGYHWRKYGQKVTRDNPSPRAYYKCSFApSCPVKKKVQRSVEDPSVLVATYEGEHNHP 189
                     58***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-30123191IPR003657WRKY domain
PROSITE profilePS5081128.323125191IPR003657WRKY domain
SuperFamilySSF1182902.22E-26127191IPR003657WRKY domain
SMARTSM007742.0E-34130190IPR003657WRKY domain
PfamPF031067.2E-25131189IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDTSSRDKSF AIDLNTNPSP QNVNSIPHEM LDEELIRMKE ENKKLTTTLT TLCENYNYLQ  60
THLIELLQKH NSEEQNSKLL SRKRKAEDDH CCENSEIISE EVSPKKPREI RNNVSTVCVK  120
TTPSDQSAVV KDGYHWRKYG QKVTRDNPSP RAYYKCSFAP SCPVKKKVQR SVEDPSVLVA  180
TYEGEHNHPL PSQAQVTVPL INQNVTTNPS FLNKFMQDID TTSLQQVLVA QMASSLTKNP  240
SFTAAVAAAI SGKFFEYD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2lex_A7e-221291921678Probable WRKY transcription factor 4
1wj2_A7e-221291921678Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0245100.0AB024510.1 Nicotiana tabacum mRNA, complete cds, 1346 bp sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009610349.10.0PREDICTED: probable WRKY transcription factor 40
SwissprotQ9SAH72e-70WRK40_ARATH; Probable WRKY transcription factor 40
TrEMBLQ9SLW81e-176Q9SLW8_TOBAC; mRNA, 1346 bp sequence
STRINGPGSC0003DMT4000190581e-137(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45002242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.13e-68WRKY DNA-binding protein 40